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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011463.1_2321_2929_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2321 - 2929
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
GGGCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAGAT
U12 Branch Point Sequence:
GTGTTGAGATTT
Flanking Amino Acid:
VIVLFNPWCPDDNVYMEKTS
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
60
46.2
Major BPS
64
0.35
1.3
60.7
45.9
Major PPT
62.3
0.28
0.9
53.9
36.7
Minor 5ss
28.7
-2.4
2.8
33.1
41.8
Minor BPS
36.5
-0.9
2.2
53.76
42

Associated Gene:

Gene:
TGM1
Ensembl Gene ID:
ENSAPLG00000017251
Chromosome:
PEDO01011463.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041486
48 - 4536
4489