About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011465.1_12308_14162_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12308 - 14162
Intron Length:
1855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GCCCCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
CCCCCCCAAACT
Flanking Amino Acid:
GATYRENCNLCTCSPGGQWQ
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
64.2
0.32
0.8
53.7
31
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
46.4
-0.1
2
61.62
47.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027817
Chromosome:
PEDO01011465.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020229
6944 - 18565
11622