Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011465.1_1642_1722_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1642 - 1722

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGACG

5'SS Class:

strong_major

3'SS Sequence:

GCTGCCCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTCAC

U12 Branch Point Sequence:

GCTGCCCCACCA

Flanking Amino Acid:

LGSVVYAHSKELITAWYIGF

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.83

0.9

72.1

39.1

Major BPS

63.6

0.34

65.3

32.1

Major PPT

61.6

0.26

Minor 5ss

27.1

-2.6

2.9

31.3

42.6

Minor BPS

-0.6

2.1

52.87

Associated Gene:

Gene:

KCNQ4

Ensembl Gene ID:

ENSAPLG00000002396

Chromosome:

PEDO01011465.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032736

60 - 7316

7257

ENSAPLT00000024640

52 - 6852

6801

ENSAPLT00000002405

53 - 6852

6800