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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011465.1_20229_20692_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20229 - 20692
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCGAG
5'SS Class:
major
3'SS Sequence:
TTCTCGCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GGGGTTTTAACC
Flanking Amino Acid:
GSISFSELQQAFSQLGYNLS
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
59.3
41.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.4
0.62
0.8
69
37.1
Minor 5ss
28.8
-2.4
3.5
36.3
48.1
Minor BPS
56.7
0.19
1.4
58.84
40.5

Associated Gene:

Gene:
PEF1
Ensembl Gene ID:
ENSAPLG00000009335
Chromosome:
PEDO01011465.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009713
19999 - 21387
1389