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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011465.1_918_1465_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
918 - 1465
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGGGT
5'SS Class:
strong_major
3'SS Sequence:
CTCCGCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAC
U12 Branch Point Sequence:
CGCGCCCCACCC
Flanking Amino Acid:
RFARKPFCVIDFIVFIASVA
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.5
41.1
Major BPS
52.9
0.07
1.1
59.6
32.7
Major PPT
72
0.5
0.8
61.7
35
Minor 5ss
37
-1.5
3.6
55.4
48.8
Minor BPS
38.7
-0.8
2
43.67
44

Associated Gene:

Gene:
KCNQ4
Ensembl Gene ID:
ENSAPLG00000002396
Chromosome:
PEDO01011465.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032736
60 - 7316
7257
ENSAPLT00000024640
52 - 6852
6801
ENSAPLT00000002405
53 - 6852
6800