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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011504.1_557_899_R

Intron Information:

Intron Rank:
135138
Intron Class:
major
Intron Phase:
Intron Coordinates:
557 - 899
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GGTCTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGCAACTGATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
67.7
0.4
1
57.7
43.2
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
44.7
-0.4
1.9
54.16
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020065
Chromosome:
PEDO01011504.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044301
32 - 1392
1361