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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011528.1_237_1508_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
237 - 1508
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTGGGGGTG
5'SS Class:
weak_major
3'SS Sequence:
GGCGGCGCGGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGAGGAG
U12 Branch Point Sequence:
GGAGGCCGAGGC
Flanking Amino Acid:
AGWRGVARGGAGLAGPGYVW
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.2
47.7
42.7
Major BPS
33.5
-1
1.5
20.5
33.8
Major PPT
40
-0.5
1.6
30.9
37.1
Minor 5ss
28
-2.5
3.8
37.1
47.5
Minor BPS
28.5
-1.6
2
30.45
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028908
Chromosome:
PEDO01011528.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037576
171 - 1952
1782