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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011539.1_876_1027_F

Intron Information:

Intron Rank:
135144
Intron Class:
major
Intron Phase:
Intron Coordinates:
876 - 1027
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
ATGCCAAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TCCATCTCAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
60.7
0.24
1
52.9
40.2
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
49.1
-0.2
1.7
51.38
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022714
Chromosome:
PEDO01011539.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044405
21 - 1383
1363
ENSAPLT00000030069
21 - 1383
1363