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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011552.1_446_555_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
446 - 555
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCAGG
5'SS Class:
major
3'SS Sequence:
CGCCCCCACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
CCGCCCCCACCC
Flanking Amino Acid:
GGFPGGRRAQDQVHRELQPP
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
63.8
47.8
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
60
0.22
0.9
50.2
33.1
Minor 5ss
37.7
-1.4
3.1
48.9
46.9
Minor BPS
39.8
-0.7
2
44.41
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017652
Chromosome:
PEDO01011552.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040656
21 - 1497
1477