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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011558.1_1767_4588_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1767 - 4588
Intron Length:
2822

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCGGGGCCA
5'SS Class:
major
3'SS Sequence:
TTAACCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TGTTTGTTAACC
Flanking Amino Acid:
MVEFSILALSMLGTTVG
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.1
55.2
35.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
73.2
0.52
0.9
63.2
39.1
Minor 5ss
14
-4.2
3.6
17.7
31.8
Minor BPS
66
0.48
2
78.59
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009036
Chromosome:
PEDO01011558.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020123
1745 - 7884
6140