Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011589.1_124334_138163_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

124334 - 138163

Intron Length:

13830

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAAGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCCTGGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAC

U12 Branch Point Sequence:

ACTTCCTAACAT

Flanking Amino Acid:

LKGYCPMGEKCKKKHTLVCP

Intron Amino Acid Position:

892

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.8

42.1

Major BPS

0.55

71.8

31.4

Major PPT

80.6

0.69

0.9

77.6

31.1

Minor 5ss

32.2

-2

40.4

45.3

Minor BPS

49.9

0.07

2.1

71.23

45.5

Associated Gene:

Gene:

ZC3H3

Ensembl Gene ID:

ENSAPLG00000021603

Chromosome:

PEDO01011589.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036966

113886 - 226503

112618