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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011589.1_148122_153674_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148122 - 153674
Intron Length:
5553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
TCTGTTTCAAAC
Flanking Amino Acid:
DLSTKSPGRAVRLSGTPGGP
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
70.2
0.45
1
66.5
38.7
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
48.4
-0.1
1.7
58.73
40.7

Associated Gene:

Gene:
ZC3H3
Ensembl Gene ID:
ENSAPLG00000021603
Chromosome:
PEDO01011589.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036966
113886 - 226503
112618