About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011589.1_253385_253563_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
253385 - 253563
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TCTCCCCGTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTAAC
U12 Branch Point Sequence:
CATGCGTTAACC
Flanking Amino Acid:
CLRMGCRCIELDCWDGPDDL
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.3
56.7
42.7
Major BPS
62.1
0.3
1.2
65
38.7
Major PPT
75.8
0.58
0.9
73.2
31.7
Minor 5ss
31
-2.2
2.8
32.6
34.4
Minor BPS
55
0.14
2.2
67.06
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008916
Chromosome:
PEDO01011589.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009365
246035 - 262986
16952