Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011589.1_254924_255148_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

254924 - 255148

Intron Length:

225

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGAGGC

5'SS Class:

major

3'SS Sequence:

CTCCCCATGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATGAA

U12 Branch Point Sequence:

TATGAATTGACT

Flanking Amino Acid:

TFVGDYTLSFWRSNRVQHCR

Intron Amino Acid Position:

600

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

57.5

Major BPS

66.7

0.41

57.8

Major PPT

66.2

0.36

61.7

33.4

Minor 5ss

29.5

-2.3

3.6

38.1

42.3

Minor BPS

51.6

0.13

1.9

74.55

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008916

Chromosome:

PEDO01011589.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009365

246035 - 262986

16952