About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011589.1_257909_258129_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
257909 - 258129
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACCTAC
U12 Branch Point Sequence:
CACCACCTACCT
Flanking Amino Acid:
STQAQEQDEASSENSPLGNF
Intron Amino Acid Position:
862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
64.8
40.9
Major BPS
45.5
-0.2
1.1
39.8
30.7
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
33.5
-1.9
2.7
44.8
42.5
Minor BPS
42.2
-0.5
2
56.31
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008916
Chromosome:
PEDO01011589.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009365
246035 - 262986
16952