Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011589.1_259021_259219_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

259021 - 259219

Intron Length:

199

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGGGGC

5'SS Class:

major

3'SS Sequence:

TTCCCTCGTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

AGAGTTTCAAAT

Flanking Amino Acid:

REATQNADARMQEGKIMERR

Intron Amino Acid Position:

939

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

59.3

39.8

Major BPS

77.3

0.68

81.5

Major PPT

77.4

0.62

0.9

72.7

32.1

Minor 5ss

23.7

-3

3.3

23.4

37.6

Minor BPS

45.6

-0.2

1.6

57.12

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008916

Chromosome:

PEDO01011589.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009365

246035 - 262986

16952