Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011589.1_269617_269786_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

269617 - 269786

Intron Length:

170

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

GAGAGATCACCT

Flanking Amino Acid:

LREEIVNPLRKTGFVKARSV

Intron Amino Acid Position:

500

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

79.5

28.2

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

83.6

0.76

0.8

76.8

37.4

Minor 5ss

32.3

-2

2.6

35.1

34.3

Minor BPS

-0.9

2.1

48.35

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008882

Chromosome:

PEDO01011589.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009233

264876 - 274158

9283