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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011589.1_271761_272032_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
271761 - 272032
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCGTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
GGAGCAGTGACT
Flanking Amino Acid:
FLTYDQKLVEIPSCFIIQMP
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
83.1
0.74
0.8
76.1
37.8
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
42.5
-0.5
2.3
58.68
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008882
Chromosome:
PEDO01011589.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009233
264876 - 274158
9283