Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011589.1_272434_272620_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

272434 - 272620

Intron Length:

187

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTCGGG

5'SS Class:

major

3'SS Sequence:

CGTTTTCCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAG

U12 Branch Point Sequence:

TGCCCTCTCAGT

Flanking Amino Acid:

KQFCSTCSKQVHSHYRRRTH

Intron Amino Acid Position:

674

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.1

0.43

1.1

52.5

44.5

Major BPS

58.6

0.22

1.5

38.9

Major PPT

79.6

0.67

0.8

77.3

31.5

Minor 5ss

41.9

-0.9

3.2

48.2

Minor BPS

41.4

-0.6

2.2

58.32

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008882

Chromosome:

PEDO01011589.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009233

264876 - 274158

9283