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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011595.1_911_976_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
911 - 976
Intron Length:
66

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CCTGCCTGACCT
Flanking Amino Acid:
QLQQHDFSSQIFSLGHCPTG
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
73.2
0.52
0.8
64.4
36.6
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
49.8
0.07
1.9
68.08
48.5

Associated Gene:

Gene:
TLE2
Ensembl Gene ID:
ENSAPLG00000002508
Chromosome:
PEDO01011595.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002564
13 - 1159
1147