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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011614.1_673_777_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
673 - 777
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGGG
5'SS Class:
major
3'SS Sequence:
CCCCCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCCT
U12 Branch Point Sequence:
CCCCCCCCCCCT
Flanking Amino Acid:
EKNFARAKWKKAVRVTTLMK
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
54.8
44.4
Major BPS
18.8
-1.9
3.9
43.7
39.4
Major PPT
72.2
0.5
0.7
64.9
23.7
Minor 5ss
21.8
-3.3
3.4
28.2
44
Minor BPS
26.7
-1.7
3.5
45.64
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019354
Chromosome:
PEDO01011614.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034508
21 - 1124
1104