Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011676.1_51_597_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51 - 597

Intron Length:

547

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

CCACCGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGCCAC

U12 Branch Point Sequence:

GGCACTGCCACC

Flanking Amino Acid:

LKHHKIIFVVGGPGSGKGTQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

67.1

44.6

Major BPS

-0.2

1.4

53.5

Major PPT

68.9

0.42

0.9

60.9

34.9

Minor 5ss

31.6

-2.1

3.1

31.9

42.5

Minor BPS

35.3

-1.1

2.2

40.38

39.3

Associated Gene:

Gene:

AK1

Ensembl Gene ID:

ENSAPLG00000027522

Chromosome:

PEDO01011676.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020170

5 - 1671

1667