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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011676.1_983_1260_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
983 - 1260
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCGCAT
U12 Branch Point Sequence:
CAAGCCCGCATG
Flanking Amino Acid:
VKQGEEFEKKIAAPTLLLYV
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
48
-0.1
1.4
56.9
40.5
Major PPT
68
0.4
0.8
61
29.2
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
35.9
-1.2
2
34.72
39.8

Associated Gene:

Gene:
AK1
Ensembl Gene ID:
ENSAPLG00000027522
Chromosome:
PEDO01011676.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020170
5 - 1671
1667