About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011695.1_1478_1583_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
1478 - 1583

Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAACCAGC

5'SS Class:
major

3'SS Sequence:
CCCTTCTCCCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCCCCAT

U12 Branch Point Sequence:
TTCTCCCCATGC

Flanking Amino Acid:
KRKLPAFPPEGSRAAEEPAP

Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.5
0.6
1.2
67.1
44.6

Major BPS
59.7
0.24
1.3
68.6
38.9

Major PPT
76.3
0.59
0.7
68.4
31.9

Minor 5ss
45.3
-0.5
2.7
61.2
43.3

Minor BPS
43
-0.5
2.3
59.12
45.7

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
PEDO01011695.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

431 - 3113
2683

21 - 3113
3093