About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011711.1_12457_13166_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12457 - 13166
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCAAT
U12 Branch Point Sequence:
CTGCACTTACCA
Flanking Amino Acid:
MRVLILLFPMAILHYQPHL
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
64.1
0.35
1.2
71
33.2
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
49.7
-0
1.9
61.57
44.3

Associated Gene:

Gene:
FABP6
Ensembl Gene ID:
ENSAPLG00000008611
Chromosome:
PEDO01011711.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008955
12429 - 17563
5135