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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011711.1_9024_13166_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
9024 - 13166
Intron Length:
4143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTGA
5'SS Class:
weak_major
3'SS Sequence:
TTCTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCAAT
U12 Branch Point Sequence:
CTGCACTTACCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
57
44.8
Major BPS
64.1
0.35
1.2
71
33.2
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
47.7
-0.2
2.9
65.4
45.7
Minor BPS
49.7
-0
1.9
61.57
44.3

Associated Gene:

Gene:
FABP6
Ensembl Gene ID:
ENSAPLG00000008611
Chromosome:
PEDO01011711.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038393
8074 - 17563
9490