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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011751.1_2284_2363_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2284 - 2363
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCATCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCCTCTCCATCC
Flanking Amino Acid:
GCKPRTVRVLDTFSLEIGDT
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
74.3
0.55
0.8
65.6
34.6
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
43.7
-0.4
2
54.69
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028354
Chromosome:
PEDO01011751.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022291
449 - 3468
3020