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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011751.1_2962_3187_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2962 - 3187
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCCTGCTCACCC
Flanking Amino Acid:
GALAAQEALKAITRKLLPLK
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
68
0.4
0.9
58.8
37
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
42.8
-0.5
2.2
49.59
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028354
Chromosome:
PEDO01011751.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022291
449 - 3468
3020