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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011751.1_647_1292_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
647 - 1292
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGAGG
5'SS Class:
major
3'SS Sequence:
GCCCGCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAA
U12 Branch Point Sequence:
TGCCCGCTGCCG
Flanking Amino Acid:
GDGTAGCARQFLLQESDVGQ
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
55.4
48.8
Major BPS
46.7
-0.2
1.2
52.4
34
Major PPT
61.8
0.27
0.9
53.6
31
Minor 5ss
36.1
-1.6
3.3
48.9
46.9
Minor BPS
28.3
-1.8
3.6
41.49
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028354
Chromosome:
PEDO01011751.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022291
449 - 3468
3020