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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011757.1_4805_4909_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4805 - 4909
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTTTTTGTATCT
Flanking Amino Acid:
LPLELVPPSFRSGKYTENIN
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.7
35.6
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
89.7
0.89
0.6
82.1
29.9
Minor 5ss
33.9
-1.8
3
43.8
43.9
Minor BPS
54.7
0.23
2.2
82.72
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028420
Chromosome:
PEDO01011757.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045371
21 - 7967
7947