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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011757.1_4996_5978_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4996 - 5978
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
TTGCTTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTGCTTATTT
Flanking Amino Acid:
QEEEPQKKQPVTFEDKRKAN
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.9
41
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
79.5
0.66
0.8
78.3
34.8
Minor 5ss
30.7
-2.2
3.1
38.3
46.6
Minor BPS
65.7
0.57
2
87.57
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028420
Chromosome:
PEDO01011757.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045371
21 - 7967
7947