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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011815.1_2538_3288_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2538 - 3288
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTTCTTCAATG
Flanking Amino Acid:
FSRKATLELTHNWGTENDEN
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
80
0.75
1
78.6
31
Major PPT
85.8
0.8
0.8
80.3
31.5
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
64
0.3
1.6
67.06
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026602
Chromosome:
PEDO01011815.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043264
498 - 6303
5806