About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011815.1_918_2396_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
918 - 2396
Intron Length:
1479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTTTCCACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTTTTCCACT
Flanking Amino Acid:
LDFYTRILGMTLLQKFDFPT
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.5
38.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78.7
0.65
0.8
78.7
28.9
Minor 5ss
28
-2.5
3
30.2
36.2
Minor BPS
58.1
0.34
2
83.3
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026602
Chromosome:
PEDO01011815.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043264
498 - 6303
5806