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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011826.1_991_1303_F

Intron Information:

Intron Rank:
135101
Intron Class:
major
Intron Phase:
Intron Coordinates:
991 - 1303
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGGGAGCT
5'SS Class:
major
3'SS Sequence:
TTGCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
59.5
39.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.2
0.75
0.9
80.8
36.5
Minor 5ss
25.8
-2.8
3.5
30.4
42.9
Minor BPS
53.6
0.19
2
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022693
Chromosome:
PEDO01011826.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033619
21 - 1518
1498