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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011837.1_802_1545_F

Intron Information:

Intron Rank:
148035
Intron Class:
major
Intron Phase:
Intron Coordinates:
802 - 1545
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGGCCC
5'SS Class:
major
3'SS Sequence:
CCCCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCCTCCTCACGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
57
38.9
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
70.9
0.47
0.7
64.7
23.9
Minor 5ss
32.7
-2
3.5
42.9
38.3
Minor BPS
43.9
-0.4
2.1
49.59
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029697
Chromosome:
PEDO01011837.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044051
21 - 1995
1975