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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011848.1_1113_1350_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1113 - 1350
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CGTCCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCCCAC
U12 Branch Point Sequence:
CCCTCCTCTCCT
Flanking Amino Acid:
QNVETALKKSNVNFVKWSSQ
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
83.4
27.7
Major BPS
42.9
-0.4
1.3
46
38.7
Major PPT
68.2
0.41
0.8
58.1
33.1
Minor 5ss
35.7
-1.6
3.2
49.9
40.5
Minor BPS
36.8
-0.9
3.6
59.71
49.4

Associated Gene:

Gene:
HSPA12B
Ensembl Gene ID:
ENSAPLG00000006317
Chromosome:
PEDO01011848.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006542
114 - 1989
1876