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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011857.1_1370_1693_R

Intron Information:

Intron Rank:
154566
Intron Class:
major
Intron Phase:
Intron Coordinates:
1370 - 1693
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGG
5'SS Class:
major
3'SS Sequence:
TGTCTTATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTTGTCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
63.2
43.6
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
75.5
0.57
0.8
74.2
35.2
Minor 5ss
36.2
-1.6
3.2
47.4
48
Minor BPS
69.2
0.68
1.7
87.15
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030724
Chromosome:
PEDO01011857.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033792
615 - 2516
1902
ENSAPLT00000021691
21 - 2516
2496
ENSAPLT00000021278
615 - 2516
1902