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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011857.1_146_1039_R

Intron Information:

Intron Rank:
154569
Intron Class:
major
Intron Phase:
Intron Coordinates:
146 - 1039
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
GGTCGTATCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATAGTTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
39.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
62.7
0.29
1
58.8
41.8
Minor 5ss
38.7
-1.3
2.9
47.6
48
Minor BPS
47.5
-0.1
1.7
63.47
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030724
Chromosome:
PEDO01011857.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021691
21 - 2516
2496