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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011857.1_1973_2364_R

Intron Information:

Intron Rank:
154567
Intron Class:
major
Intron Phase:
Intron Coordinates:
1973 - 2364
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTCCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GCTGTTTTAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
76.9
34.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89.4
0.89
0.6
87.7
22.3
Minor 5ss
42.7
-0.8
3
59
45.5
Minor BPS
52.2
0.15
1.7
67.46
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030724
Chromosome:
PEDO01011857.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021278
615 - 2516
1902