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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011886.1_992_2517_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
992 - 2517
Intron Length:
1526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CCTTCCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTGTGCTCATCG
Flanking Amino Acid:
ERYCRGVSAIVYMVDAADQE
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
74.3
36.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
74.7
0.56
0.9
69
31.5
Minor 5ss
36.8
-1.5
2.9
46.6
41.8
Minor BPS
46.9
-0.3
2.3
59.35
48.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022318
Chromosome:
PEDO01011886.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018548
21 - 2632
2612