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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011890.1_26255_31522_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26255 - 31522
Intron Length:
5268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGGAGA
5'SS Class:
major
3'SS Sequence:
CTTATGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTATATATATAT
Flanking Amino Acid:
TLSEEQLYSKLSHLQKVIEE
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
61.7
44.4
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
83.4
0.75
0.9
80.4
37
Minor 5ss
26.6
-2.7
3
31.6
42.3
Minor BPS
45.2
-0.2
2
68.33
41.9

Associated Gene:

Gene:
GOLGB1
Ensembl Gene ID:
ENSAPLG00000009442
Chromosome:
PEDO01011890.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009877
19582 - 67087
47506