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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011890.1_32212_37596_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32212 - 37596
Intron Length:
5385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTTT
5'SS Class:
major
3'SS Sequence:
TATCTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTCCATATCT
Flanking Amino Acid:
ELHMAEQQKQMLQDQCQKMS
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.9
34.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.9
0.88
0.7
83.7
30.9
Minor 5ss
45.1
-0.5
3.1
67.5
43.4
Minor BPS
66.3
0.59
1.9
87.76
37.1

Associated Gene:

Gene:
GOLGB1
Ensembl Gene ID:
ENSAPLG00000009442
Chromosome:
PEDO01011890.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009877
19582 - 67087
47506