Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011890.1_5754_6775_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5754 - 6775

Intron Length:

1022

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGAATG

5'SS Class:

strong_major

3'SS Sequence:

GTGCCTGACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAG

U12 Branch Point Sequence:

TTGTGCCTGACA

Flanking Amino Acid:

VFNKIDVNGDGELSLDEFVE

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

0.9

73.3

37.3

Major BPS

67.4

0.43

1.5

65.3

43.7

Major PPT

60.1

0.23

53.3

40.7

Minor 5ss

31.8

-2.1

37.5

41.1

Minor BPS

52.4

0.07

2.1

71.13

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020136

Chromosome:

PEDO01011890.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047193

5069 - 8470

3402