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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011902.1_1459_1800_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1459 - 1800
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GGTTTGTTATTC
Flanking Amino Acid:
LKWILLNVFKEFHKLELDSL
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.9
35.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.3
0.75
0.8
77.6
36.5
Minor 5ss
31.1
-2.2
2.6
30
35.1
Minor BPS
46.5
-0.2
2.2
59.06
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023974
Chromosome:
PEDO01011902.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023908
245 - 2461
2217