About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011905.1_595_827_R

Intron Information:

Intron Rank:
145888
Intron Class:
major
Intron Phase:
Intron Coordinates:
595 - 827
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTATCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.8
0.83
0.7
81.6
30.3
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
67.8
0.64
1.5
82.83
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025881
Chromosome:
PEDO01011905.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040480
21 - 2345
2325