Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011908.1_3821_4082_F

Intron Information:

Intron Rank:

139663

Intron Class:

major

Intron Phase:

Intron Coordinates:

3821 - 4082

Intron Length:

262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCACC

5'SS Class:

strong_major

3'SS Sequence:

CATTCCTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTCCAT

U12 Branch Point Sequence:

CACCCAACAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

74.9

35.3

Major BPS

68.5

0.46

1.2

78.5

35.1

Major PPT

79.2

0.66

0.8

69.9

36.2

Minor 5ss

35.2

-1.7

2.8

43.7

Minor BPS

41.2

-0.6

1.9

47.9

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025073

Chromosome:

PEDO01011908.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032350

3138 - 5600

2463