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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011917.1_732_1489_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
732 - 1489
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
CAGCTCTTACAT
Flanking Amino Acid:
TRRLHSLTASLRHRTEPSRG
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.3
43.2
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
72
0.5
0.8
65.4
30.4
Minor 5ss
37
-1.5
2.7
47
41.7
Minor BPS
47.4
-0.1
1.7
59.19
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019682
Chromosome:
PEDO01011917.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036852
21 - 2780
2760