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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011943.1_760_5497_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
760 - 5497
Intron Length:
4738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
GTCTTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
GTCTTTCCAACA
Flanking Amino Acid:
DVGHNETSHYSRLAKSTLLL
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
68
42.9
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
74.5
0.55
0.9
70
35.3
Minor 5ss
38.4
-1.3
3
52.4
38.3
Minor BPS
47.7
-0.1
1.8
60.42
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027479
Chromosome:
PEDO01011943.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034470
21 - 13416
13396