Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011962.1_2301_5127_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2301 - 5127

Intron Length:

2827

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTTAATTAA

5'SS Class:

major

3'SS Sequence:

TGCAGAGAGCCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGGCAA

U12 Branch Point Sequence:

CTCGTGGCAAGA

Flanking Amino Acid:

VRIAHELNCTICAQEQLLCT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.3

0.32

1.2

67.7

33.2

Major BPS

43.3

-0.4

1.5

49.1

46.3

Major PPT

48.1

-0.1

1.2

35.8

44.1

Minor 5ss

37.7

-1.4

2.8

42.6

Minor BPS

29.9

-1.5

2.5

37.43

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028202

Chromosome:

PEDO01011962.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036433

1142 - 5159

4018