Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011966.1_2071_2171_F

Intron Information:

Intron Rank:

142739

Intron Class:

major

Intron Phase:

Intron Coordinates:

2071 - 2171

Intron Length:

101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGAGGA

5'SS Class:

major

3'SS Sequence:

TTTTTCTTTGAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TTTTCTTTGAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.1

58.8

40.6

Major BPS

87.3

0.93

0.8

36.5

Major PPT

84.7

0.78

0.9

87.1

23.9

Minor 5ss

28.5

-2.5

3.5

43.4

Minor BPS

70.8

0.51

1.4

75.57

36.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026954

Chromosome:

PEDO01011966.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039113

2010 - 3716

1707